Not Seeing an Expected Peak in an HPLC Assay - Tips & Suggestions
September 27, 2013
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Date: 27-SEPTEMBER-2013   Last Updated: 30-NOVEMBER-2025

Troubleshooting: No Peak Detected

If you do not see a peak during analysis, follow these steps to investigate possible reasons:

  1. Check Column Connection

    • Detach the column and replace it with a column union.
    • Inject the solution again.
      • If a peak appears: The issue may be with your column (e.g., poor retention or elution).
      • If no peak appears: Continue to the next steps.
  2. Verify Sample Preparation

    • Ensure the analyte is properly extracted and present in the sample.
    • Confirm the sample level is sufficient for the autosampler syringe.
      • If the level is too low, the needle may aspirate air instead of the sample.
  3. Inspect Detector Performance

    • A malfunctioning detector can prevent peak detection. Check for proper operation.
  4. Confirm Flow Path

    • On systems with multiple column options, verify that flow is directed to your column.
    • If there is no pressure with the column connected, flow may not be reaching it.
 

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